Zebrafish communitiy meeting
Dates: November 17-18th 2022
Venue
Evolutionary Biology Center, Uppsala University
Zootis: https://link.mazemap.com/uvR5ZMgd
Hörstadius: https://link.mazemap.com/i99nrsf9
Lärosal 1: https://link.mazemap.com/aTng4mqf
Registration: https://doit.medfarm.uu.se/bin/kurt3/kurt/67763
Registration deadline: November 4th
Registration fee of 500 SEK/person should be paid
Please remember to always state our reference code and event name.
| Meeting Program | |||
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November 17th (Thusday) |
November 18th (Friday) |
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TIME |
Session and location |
TIME2 |
Session and location |
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10:30-12:00 |
15’ lab presentations (Zootis) |
9:00-10:30 |
15’ lab presentations (Zootis) |
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12:00-13:13 |
Lunch (Hassan&Preecha Restaurant) |
10:30-11:00 |
Fika break with discussions |
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13:15-14:30 |
5’ short talks (Zootis) |
11:00-12:00 |
15’ presentations (Zootis) |
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14:30-15:15 |
Fika break with discussions |
12:00-13:15 |
Lunch (Hassan&Preecha Restaurant) |
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15:15-16:00 |
Invited speaker (Zootis) |
13:15-14:15 |
Image analysis workshop (Hörstadius) |
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16:16-17:15 |
Parallel session; Image analysis workshop (Hörstadius) |
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16:16-17:15 |
Parallel session; Strategic planing (Lärosal 1) |
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17:30-21:00 |
After work with inspirational speech (Le Parc Bistro & Bar) |
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Thursday, November 17th
10:30-12:00
Session chair: Johan Ledin (Uppsala Univeristy)
15’ lab presentations:
Olov Andersson (Karolinska Institute)
Petronella Kettunen (Göteborg University)
Remy Manuel (Uppsala University)
Rodrigo Morales (Karolinska Institute)
Lasse Jensen (Linköping University)
Svante Winberg (Uppsala University)
12:00-13:15
Lunch break
13:15-14:30
Session chair: Alexandra Abramsson (Göteborg University)
5’ short talks
Oly Sen Sarma (Uppsala University)
Maryam Rahmati (Göteborg University)
Transcriptional adaptation between zebrafish amyloid precursor protein gene family members
Jesus Rodriguez Curt (Uppsala University)
Lianhe Chu (Karolinska Institute)
David Lagman (Uppsala University)
Marleen Gloger (Uppsala University)
Nils Denhag (Umeå University)
The extraocular muscles: Keys to deciphering muscular dystrophies
Alexis Buatois (Göteborg University)
OBS! Several vacant short talks!
14:30-15:15
Fika & short talks discussions
15:15-16:00
Session chair: Kaska Koltowska (Uppsala University)
Invited speaker: Elke Ober (University of Copenhagen)
https://danstem.ku.dk/people/ober-group/elke-ober/
16:15-17:15
Parallel sessions:
- Image analysis session with Amin Allalou (Hörstadius)
- PI meeting/strategic planning (Lärosal 1)
17:45
After work in Le Parc Bistro&Bar with inspirational speech by Lasse Jensen, founder of BioReperia
www.bioreperia.com
www.leparc.se
Friday, November 18th
9:00-10:30
Session chair: Petronella Kettunen
15’ labs presentations
Alexandra Abramsson (Göteborg University)
Dan Larhammar (Uppsala University)
Kaska Koltowska (Uppsala University)
Lars Bräutigam (Karolinska Institute)
Johan Ledin (Uppsala University)
Jonas von Hofsten (Umeå University)
10:30-11:00
Fika
11:00-12:00
Session chair: Lars Bräutigam (Karolinska Institute)
Tiffany Klingström (Uppsala University)
New zebrafish facility at Uppsala University introduction
Vazquez-Rodriguez (BioReperia)
Progress translating zebrafish tumor xenograft (ZTX) models to clinical prognostics and companion diagnostics
Tatjana Haitina (Uppsala University)
3D histology reconstruction of juvenile and adult zebrafish by using synchrotron microtomography imaging
Christoph Metzendorf (Uppsala University)
Imaging-based and luminescence-based screening for kidney function in zebrafish
12:00-13:15
Lunch with group discussions
13:15-14:15
Image analysis session with Amin Allalou (Hörstadius)
Image analysis session
Bio:
Image analysis session will be leaded by Amin Allalou, PhD, a researcher at the Department of Information Technology, (Vi3; Image Analysis) and BioImage Informatics facility (BIIF) at SciLifeLab.
His research is focused on developing image analysis and machine learning algorithms for biomedical applications, with a special focus on zebrafish image data.
Workshop:
The aim of the workshop is to provide you with an overview of imaging techniques and analysis methods that we can provide. The workshop will be interactive with a short initial presentation followed by an open discussion based on your imaging, quantification, and phenotyping research questions.
Organizers:
Beata Filipek-Gorniok (Uppsala University)
Lasse Jensen (Linköping University)
Kaska Koltowska (Uppsala University)
Contact:
Beata Filipek-Gorniok
beata.filipek.gorniok@ebc.uu.se