Jakobsson Lab publications

  • Peyroteo Stjerna, Rita

    Chronology of the burial activity of the last hunter-gatherers in the southwestern Iberian Peninsula, Portugal

    Part of Radiocarbon, p. 265-299, 2021.

    Open access
  • Fortes-Lima, Cesar A.; Schlebusch, Carina

    Closing the Gaps in Genomic Research

    Part of Trends in Genetics, p. 104-106, 2021.

    Open access
  • Kilinc, Gulsah Merve; Kashuba, Natalija; Koptekin, Dilek; Bergfeldt, Nora et al.

    Human population dynamics and Yersinia pestis in ancient northeast Asia

    Part of Science Advances, 2021.

    Open access
  • Seidensticker, Dirk; Hubau, Wannes; Verschuren, Dirk; Fortes-Lima, Cesar et al.

    Population collapse in Congo rainforest from 400 CE urges reassessment of the Bantu Expansion

    Part of Science Advances, 2021.

    Open access
  • Vicente, Mário; Schlebusch, Carina

    African population history: an ancient DNA perspective.

    Part of Current Opinion in Genetics and Development, p. 8-15, 2020.

    Open access
  • Semo, Armando; Gaya-Vidal, Magdalena; Fortes-Lima, Cesar A.; Alard, Berenice et al.

    Along the Indian Ocean Coast: Genomic Variation in Mozambique Provides New Insights into the Bantu Expansion

    Part of Molecular biology and evolution, p. 406-416, 2020.

    Open access
  • Feuerborn, Tatiana R.; Palkopoulou, Eleftheria; van der Valk, Tom; von Seth, Johanna et al.

    Competitive mapping allows for the identification and exclusion of human DNA contamination in ancient faunal genomic datasets

    Part of BMC Genomics, 2020.

    Open access
  • Anava, Sarit; Neuhof, Moran; Gingold, Hila; Sagy, Or et al.

    Illuminating Genetic Mysteries of the Dead Sea Scrolls

    Part of Cell, p. 1218-+, 2020.

  • Schlebusch, Carina; Sjödin, Per; Breton, Gwenna; Günther, Torsten et al.

    Khoe-San Genomes Reveal Unique Variation and Confirm the Deepest Population Divergence in Homo sapiens

    Part of Molecular biology and evolution, 2020.

    Open access
  • Juras, Anna; Makarowicz, Przemyslaw; Chylenski, Maciej; Ehler, Edvard et al.

    Mitochondrial genomes from Bronze Age Poland reveal genetic continuity from the Late Neolithic and additional genetic affinities with the steppe populations

    Part of American Journal of Physical Anthropology, p. 176-188, 2020.

  • Hollfelder, Nina; Erasmus, Johannes Christoff; Hammarén, Rickard; Vicente, Mário et al.

    Patterns of African and Asian admixture in the Afrikaner population of South Africa

    Part of BMC Biology, 2020.

    Open access
  • Li, Jiarui; Zarzar, Tomas Gonzalez; White, Julie D.; Indencleef, Karlijne et al.

    Robust genome-wide ancestry inference for heterogeneous datasets: illustrated using the 1,000 genome project with 3D facial images

    Part of Scientific Reports, 2020.

    Open access
  • Coutinho, Alexandra; Günther, Torsten; Munters, Arielle R.; Svensson, Emma M. et al.

    The Neolithic Pitted Ware culture foragers were culturally but not genetically influenced by the Battle Axe culture herders

    Part of American Journal of Physical Anthropology, p. 638-649, 2020.

    Open access
  • Naidoo, Thijessen; Xu, Jingzi; Vicente, Mário; Malmström, Helena et al.

    Y-Chromosome Variation in Southern African Khoe-San Populations Based on Whole-Genome Sequences

    Part of Genome Biology and Evolution, p. 1031-1039, 2020.

    Open access
  • Shebanits, Kateryna; Günther, Torsten; Johansson, Anna C. V.; Maqbool, Khurram et al.

    Copy number determination of the gene for the human pancreatic polypeptide receptor NPY4R using read depth analysis and droplet digital PCR.

    Part of BMC Biotechnology, 2019.

    Open access
  • Steyn, Maryna; Whitelaw, Gavin; Botha, Deona; Vicente, Mário et al.

    Four Iron Age women from KwaZulu-Natal: biological anthropology, genetics and archaeological context

    Part of Southern African Humanities, p. 23-56, 2019.

  • Vicente, Mário; Jakobsson, Mattias; Ebbesen, Peter; Schlebusch, Carina

    Genetic Affinities among Southern Africa Hunter-Gatherers and the Impact of Admixing Farmer and Herder Populations

    Part of Molecular biology and evolution, p. 1849-1861, 2019.

    Open access
  • Lombard, Marlize; Malmström, Helena; Schlebusch, Carina; Svensson, Emma et al.

    Genetic data and radiocarbon dating question Plovers Lake as a Middle Stone Age hominin-bearing site

    Part of Journal of Human Evolution, p. 203-209, 2019.

  • Binzer-Panchal, Amrei; Hardell, Elin; Viklund, Björn; Ghaderi, Mehran et al.

    Integrated Molecular Analysis of Undifferentiated Uterine Sarcomas Reveals Clinically Relevant Molecular Subtypes

    Part of Clinical Cancer Research, p. 2155-2165, 2019.

  • Sole, Marina; Ablondi, Michela; Binzer, Amrei; Velie, Brandon D. et al.

    Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds

    Part of BMC Genomics, 2019.

    Open access
  • Cubas, Miriam; Peyroteo Stjerna, Rita; Fontanals-Coll, Maria; Llorente-Rodríguez, Laura et al.

    Long-term dietary change in Atlantic and Mediterranean Iberia with the introduction of agriculture: a stable isotope perspective

    Part of Archaeological and Anthropological Sciences, p. 3825-3836, 2019.

    Open access
  • Tournebize, Rémi; Poncet, Valérie; Jakobsson, Mattias; Vigouroux, Yves et al.

    McSwan: A joint site frequency spectrum method to detect and date selective sweeps across multiple population genomes

    Part of Molecular Ecology Resources, p. 283-295, 2019.

  • Sanchez-Quinto, Federico; Malmström, Helena; Fraser, Magdalena; Girdland-Flink, Linus et al.

    Megalithic tombs in western and northern Neolithic Europe were linked to a kindred society

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 9469-9474, 2019.

    Open access
  • Vicente, Mário; Priehodova, Edita; Diallo, Issa; Podgorna, Eliska et al.

    Population history and genetic adaptation of the Fulani nomads: inferences from genome-wide data and the lactase persistence trait

    Part of BMC Genomics, 2019.

    Open access
  • Terrinoni, Manuela; Holmgren, Jan; Lebens, Michael; Larena, Maximilian

    Proteomic analysis of cholera toxin adjuvant-stimulated human monocytes identifies Thrombospondin-1 and Integrin-beta 1 as strongly upregulated molecules involved in adjuvant activity

    Part of Scientific Reports, 2019.

    Open access
  • Terrinoni, Manuela; Holmgren, Jan; Lebens, Michael; Larena, Maximilian

    Requirement for Cyclic AMP/Protein Kinase A-Dependent Canonical NFκB Signaling in the Adjuvant Action of Cholera Toxin and Its Non-toxic Derivative mmCT

    Part of Frontiers in Immunology, 2019.

    Open access
  • Malmström, Helena; Günther, Torsten; Svensson, Emma M.; Juras, Anna et al.

    The genomic ancestry of the Scandinavian Battle Axe Culture people and their relation to the broader Corded Ware horizon

    Part of Proceedings of the Royal Society of London. Biological Sciences, 2019.

    Open access
  • Günther, Torsten; Nettelblad, Carl

    The presence and impact of reference bias on population genomic studies of prehistoric human populations

    Part of PLoS Genetics, 2019.

    Open access
  • Fortes-Lima, Cesar A.; Mtetwa, Ezekia; Schlebusch, Carina

    Unraveling African diversity from a cross‐disciplinary perspective

    Part of Evolutionary anthropology (Print), 2019.

    Open access
  • Price, Neil; Hedenstierna-Jonson, Charlotte; Zachrisson, Torun; Kjellström, Anna et al.

    Viking warrior women?: Reassessing Birka chamber grave Bj.581

    Part of Antiquity, p. 181-198, 2019.

    Open access
  • Krzewinska, Maja; Kilinc, Gulsah Merve; Juras, Anna; Koptekin, Dilek et al.

    Ancient genomes suggest the eastern Pontic-Caspian steppe as the source of western Iron Age nomads

    Part of Science Advances, 2018.

  • Lombard, Marlize; Jakobsson, Mattias; Schlebusch, Carina

    Ancient human DNA: How sequencing the genome of a boy from Ballito Bay changed human history

    Part of South African Journal of Science, 2018.

    Open access
  • Kuhn, Jose Manuel Monroy; Jakobsson, Mattias; Günther, Torsten

    Estimating genetic kin relationships in prehistoric populations

    Part of PLoS ONE, 2018.

    Open access
  • Valdiosera, Cristina; Günther, Torsten; Carlos Vera-Rodriguez, Juan; Urena, Irene et al.

    Four millennia of Iberian biomolecular prehistory illustrate the impact of prehistoric migrations at the far end of Eurasia

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 3428-3433, 2018.

  • Krzewinska, Maja; Kjellstrom, Anna; Günther, Torsten; Hedenstierna-Jonson, Charlotte et al.

    Genomic and Strontium Isotope Variation Reveal Immigration Patterns in a Viking Age Town

    Part of Current Biology, p. 2730-2738.e10, 2018.

    Open access
  • Kilinc, Gulsah Merve; Kashuba, Natalija; Yaka, Reyhan; Sumer, Arev Pelin et al.

    Investigating Holocene human population history in North Asia using ancient mitogenomes

    Part of Scientific Reports, 2018.

    Open access
  • Juras, Anna; Chylenski, Maciej; Ehler, Edvard; Malmström, Helena et al.

    Mitochondrial genomes reveal an east to west cline of steppe ancestry in Corded Ware populations

    Part of Scientific Reports, 2018.

    Open access
  • Fraser, Magdalena; Sanchez-Quinto, Federico; Evans, Jane; Storå, Jan et al.

    New insights on cultural dualism and population structure in the MiddleNeolithic Funnel Beaker culture on the island of Gotland

    Part of Journal of Archaeological Science, p. 325-334, 2018.

  • Naidoo, Thijessen; Sjödin, Per; Schlebusch, Carina; Jakobsson, Mattias

    Patterns of variation in cis-regulatory regions: examining evidence of purifying selection

    Part of BMC Genomics, 2018.

    Open access
  • Günther, Torsten; Malmström, Helena; Svensson, Emma; Omrak, Ayca et al.

    Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation

    Part of PLoS biology, 2018.

    Open access
  • Schlebusch, Carina; Jakobsson, Mattias

    Tales of Human Migration, Admixture, and Selection in Africa

    Part of Annual review of genomics and human genetics (Print), p. 405-428, 2018.

  • Fraser, Magdalena; Sjödin, Per; Sanchez-Quinto, Federico; Evans, Jane et al.

    The Stone Cist Conundrum: A multidisciplinary approach to investigate Late Neolithic/ Early Bronze Age population demography on the Island of Gotland

    Part of Journal of Archaeological Science, p. 324-337, 2018.

  • Hedenstierna-Jonson, Charlotte; Kjellström, Anna; Zachrisson, Torun; Krzewińska, Maja et al.

    A female Viking warrior confirmed by genomics

    Part of American Journal of Physical Anthropology, p. 853-860, 2017.

    Open access
  • Owers, Katharine A.; Sjödin, Per; Schlebusch, Carina M.; Skoglund, Pontus et al.

    Adaptation to infectious disease exposure in indigenous Southern African populations

    Part of Proceedings of the Royal Society of London. Biological Sciences, 2017.

  • Goldberg, Amy; Günther, Torsten; Rosenberg, Noah A.; Jakobsson, Mattias

    Ancient X chromosomes reveal contrasting sex bias in Neolithic and Bronze Age Eurasian migrations

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 2657-2662, 2017.

  • Pinto da Silva, André; Curveira-Santos, Gonçalo; Kilshaw, Kerry; Newman, Chris et al.

    Climate and anthropogenic factors determine site occupancy in Scotland's Northern-range badger population: implications of context-dependent responses under environmental change

    Part of Diversity & distributions, p. 627-639, 2017.

  • Vicente, Mário; Ebbesen, Peter; Jakobsson, Mattias; Schlebusch, Carina

    Genetic variation of southern Africa hunter-gatherers and the impact of admixture with farming and pastoralist populations

    Part of American Journal of Physical Anthropology, p. 395-395, 2017.

  • Rodriguez-Varela, Ricardo; Günther, Torsten; Krzewinska, Maja; Stora, Jan et al.

    Genomic Analyses of Pre-European Conquest Human Remains from the Canary Islands Reveal Close Affinity to Modern North Africans

    Part of Current Biology, p. 3396-3402, 2017.

    Open access
  • Juras, Anna; Chylenski, Maciej; Krenz-Niedbala, Marta; Malmström, Helena et al.

    Investigating kinship of Neolithic post-LBK human remains from Krusza Zamkowa, Poland using ancient DNA

    Part of Forensic Science International, p. 30-39, 2017.

  • Chylenski, Maciej; Juras, Anna; Ehler, Edvard; Malmström, Helena et al.

    Late Danubian mitochondrial genomes shed light into the Neolithisation of Central Europe in the 5th millennium BC

    Part of BMC Evolutionary Biology, 2017.

    Open access
  • Pilloud, Marin A.; Somel, Mehmet; Haddow, Scott D.; Knusel, Christopher J. et al.

    Mobility in Neolithic Central Anatolia: A Comparison of Dental Morphometrics and aDNA

    Part of American Journal of Physical Anthropology, p. 316-316, 2017.

  • Goldberg, Amy; Günther, Torsten; Rosenberg, Noah A.; Jakobsson, Mattias

    Neolithic familial migration contrasts Bronze Age male migration inferred from ancient X chromosomes

    Part of American Journal of Physical Anthropology, p. 196-196, 2017.

  • Hollfelder, Nina; Schlebusch, Carina M.; Günther, Torsten; Babiker, Hiba et al.

    Northeast African genomic variation shaped by the continuity of indigenous groups and Eurasian migrations

    Part of PLOS Genetics, 2017.

    Open access
  • Goldberg, Amy; Günther, Torsten; Rosenberg, Noah A.; Jakobsson, Mattias

    Robust model-based inference of male-biased admixture during Bronze Age migration from the Pontic-Caspian Steppe: Reply to Lazaridis and Reich

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. E3875-E3877, 2017.

  • Schlebusch, Carina; Malmström, Helena; Günther, Torsten; Sjödin, Per et al.

    Southern African ancient genomes estimate modern human divergence to 350,000 to 260,000 years ago

    Part of Science, p. 652-655, 2017.

  • Nielsen, Rasmus; Akey, Joshua M.; Jakobsson, Mattias; Pritchard, Jonathan K. et al.

    Tracing the peopling of the world through genomics

    Part of Nature, p. 302-310, 2017.

  • Somel, Mehmet; Kilinc, Gulsah Merve; Ozer, Fusun; Omrak, Ayca et al.

    Archaeogenomic analysis of ancient Anatolians: first genetic indication for Neolithic cultural diffusion in the Near East

    Part of American Journal of Physical Anthropology, p. 297-298, 2016.

  • Sten, Sabine; Lovén, Christian; Kjellström, Anna; Liden, Kerstin et al.

    Erik den heliges skelett

    Part of Fornvännen, p. 27-40, 2016.

    Open access
  • Günther, Torsten; Jakobsson, Mattias

    Genes mirror migrations and cultures in prehistoric Europe - a population genomic perspective

    Part of Current Opinion in Genetics and Development, p. 115-123, 2016.

  • Günther, Torsten; Lampei, Christian; Barilar, Ivan; Schmid, Karl J.

    Genomic and phenotypic differentiation of Arabidopsis thaliana along altitudinal gradients in the North Italian Alps

    Part of Molecular Ecology, p. 3574-3592, 2016.

  • Omrak, Ayca; Günther, Torsten; Valdiosera, Cristina; Svensson, Emma M. et al.

    Genomic Evidence Establishes Anatolia as the Source of the European Neolithic Gene Pool

    Part of Current Biology, p. 270-275, 2016.

  • Gattepaille, Lucie; Günther, Torsten; Jakobsson, Mattias

    Inferring Past Effective Population Size from Distributions of Coalescent Times

    Part of Genetics, p. 1191-1206, 2016.

  • Jeong, Choongwon; Ozga, Andrew T.; Witonsky, David; Malmström, Helena et al.

    Long-term genetic stability and a high altitude East Asian origin for the peoples of the high valleys of the Himalayan arc

    Part of American Journal of Physical Anthropology, p. 185-185, 2016.

  • Jeong, Choongwon; Ozga, Andrew T.; Witonsky, David B.; Malmström, Helena et al.

    Long-term genetic stability and a high-altitude East Asian origin for the peoples of the high valleys of the Himalayan arc

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 7485-7490, 2016.

    Open access
  • Allen, Marie; Bjerke, Mia; Edlund, Hanna; Nelander, Sven et al.

    Origin of the U87MG glioma cell line: Good news and bad news

    Part of Science Translational Medicine, 2016.

  • Kilinc, Gülsah Merve; Omrak, Ayca; Ozer, Fusun; Günther, Torsten et al.

    The Demographic Development of the First Farmers in Anatolia

    Part of Current Biology, p. 2659-2666, 2016.

    Open access
  • Schlebusch, Carina M.; Prins, Frans; Lombard, Marlize; Jakobsson, Mattias et al.

    The disappearing San of southeastern Africa and their genetic affinities

    Part of Human Genetics, p. 1365-1373, 2016.

    Open access
  • Jakobsson, Mattias

    The genomic footprints of Stone-Age Europeans

    Part of American Journal of Physical Anthropology, p. 184-184, 2016.

  • Hervella, M.; Svensson, Emma M.; Alberdi, A.; Günther, Torsten et al.

    The mitogenome of a 35,000-year-old Homo sapiens from Europe supports a Palaeolithic back-migration to Africa

    Part of Scientific Reports, 2016.

    Open access
  • Karmin, Monika; Saag, Lauri; Vicente, Mário; Wilson Sayres, Melissa A et al.

    A recent bottleneck of Y chromosome diversity coincides with a global change in culture.

    Part of Genome Research, 2015.

  • Günther, Torsten; Valdiosera, Cristina; Malmström, Helena; Urena, Irene et al.

    Ancient genomes link early farmers from Atapuerca in Spain to modern-day Basques

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 11917-11922, 2015.

  • Malmström, Helena Jankovic; Linderholm, Anna; Skoglund, Pontus; Stora, Jan et al.

    Ancient mitochondrial DNA from the northern fringe of the Neolithic farming expansion in Europe sheds light on the dispersion process

    Part of Philosophical Transactions of the Royal Society of London. Biological Sciences, p. 20130373-, 2015.

  • Kopelman, Naama M.; Mayzel, Jonathan; Jakobsson, Mattias; Rosenberg, Noah A. et al.

    Clumpak: a program for identifying clustering modes and packaging population structure inferences across K

    Part of Molecular Ecology Resources, p. 1179-1191, 2015.

  • Pucholt, Pascal; Sjödin, Per; Weih, Martin; Rönnberg-Wastljung, Ann Christin et al.

    Genome-wide transcriptional and physiological responses to drought stress in leaves and roots of two willow genotypes

    Part of BMC Plant Biology, 2015.

    Open access
  • Raghavan, Maanasa; Steinruecken, Matthias; Harris, Kelley; Schiffels, Stephan et al.

    Genomic evidence for the Pleistocene and recent population history of Native Americans

    Part of Science, 2015.

  • Duforet-Frebourg, Nicolas; Gattepaille, Lucie M.; Blum, Michael G. B.; Jakobsson, Mattias

    HaploPOP: a software that improves population assignment by combining markers into haplotypes

    Part of BMC Bioinformatics, 2015.

    Open access
  • Schlebusch, Carina M.; Gattepaille, Lucie M.; Engstroem, Karin; Vahter, Marie et al.

    Human Adaptation to Arsenic-Rich Environments

    Part of Molecular biology and evolution, p. 1544-1555, 2015.

  • Kuehnelt, Doris; Engström, Karin; Skroder, Helena; Kokarnig, Sabine et al.

    Selenium metabolism to the trimethylselenonium ion (TMSe) varies markedly because of polymorphisms in the indolethylamine N-methyltransferase gene

    Part of American Journal of Clinical Nutrition, p. 1406-1415, 2015.

  • da Fonseca, Rute R.; Smith, Bruce D.; Wales, Nathan; Cappellini, Enrico et al.

    The origin and evolution of maize in the Southwestern United States

    Part of Nature Plants, 2015.

  • Clemente, Florian J; Cardona, Alexia; Inchley, Charlotte E; Peter, Benjamin M et al.

    A Selective Sweep on a Deleterious Mutation in CPT1A in Arctic Populations.

    Part of American Journal of Human Genetics, 2014.

  • Juras, Anna; Dabert, Miroslawa; Kushniarevich, Alena; Malmström, Helena Jankovic et al.

    Ancient DNA Reveals Matrilineal Continuity in Present-Day Poland over the Last Two Millennia

    Part of PLoS ONE, p. e110839-, 2014.

    Open access
  • Sjödin, Per; Skoglund, Pontus; Jakobsson, Mattias

    Assessing the Maximum Contribution from Ancient Populations

    Part of Molecular biology and evolution, p. 1248-1260, 2014.

  • Flink, Linus Girdland; Allen, Richard; Barnett, Ross; Malmström, Helena et al.

    Establishing the validity of domestication genes using DNA from ancient chickens

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 6184-6189, 2014.

  • Li, Sen; Schlebusch, Carina; Jakobsson, Mattias

    Genetic variation reveals large-scale population expansion and migration during the expansion of Bantu-speaking peoples

    Part of Proceedings of the Royal Society of London. Biological Sciences, 2014.

  • Skoglund, Pontus; Malmstrom, Helena; Omrak, Ayca; Raghavan, Maanasa et al.

    Genomic Diversity and Admixture Differs for Stone-Age Scandinavian Foragers and Farmers

    Part of Science, p. 747-750, 2014.

  • Skoglund, Pontus; Sjödin, Per; Skoglund, Tobias; Lascoux, Martin et al.

    Investigating population history using temporal genetic differentiation

    Part of Molecular biology and evolution, p. 2516-2527, 2014.

  • Breton, Gwenna; Schlebusch, Carina M.; Lombard, Marlize; Sjödin, Per et al.

    Lactase Persistence Alleles Reveal Partial East African Ancestry of Southern African Khoe Pastoralists

    Part of Current Biology, p. 852-858, 2014.

  • Svensson, Emma M.; Hasler, S.; Nussbaumer, M.; Rehazek, A. et al.

    Medieval cattle in Bern (Switzerland): An archaeozoological, genetic and historical Approach

    Part of Schweizer Archiv für Tierheilkunde, p. 17-26, 2014.

  • Niiranen, L.; Makela, K.; Thalmann, Olaf; Saarela, S. et al.

    Metabolic regulatory mechanisms in overwintering raccoon dogs (Nyctereutes procyonoides)

    Part of Acta Physiologica, p. 64-64, 2014.

  • Barbieri, Chiara; Vicente, Mário; Oliveira, Sandra; Bostoen, Koen et al.

    Migration and interaction in a contact zone: mtDNA variation among Bantu-speakers in Southern Africa.

    Part of PLoS ONE, 2014.

  • Sjöstrand, Agnès E.; Sjödin, Per; Jakobsson, Mattias

    Private haplotypes can reveal local adaptation

    Part of BMC Genetics, p. 61-, 2014.

    Open access
  • Skoglund, Pontus; Northoff, Bernd H; Shunkov, Michael V; Derevianko, Anatoli P et al.

    Separating endogenous ancient DNA from modern-day contamination: application to a Siberian Neandertal

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 2229-2234, 2014.

  • Raghavan, Maanasa; DeGiorgio, Michael; Albrechtsen, Anders; Moltke, Ida et al.

    The genetic prehistory of the New World Arctic

    Part of Science, p. 1020-, 2014.

  • Rasmussen, Morten; Anzick, Sarah L.; Waters, Michael R.; Skoglund, Pontus et al.

    The genome of a Late Pleistocene human from a Clovis burial site in western Montana

    Part of Nature, p. 225-229, 2014.

  • Raghavan, Maanasa; Skoglund, Pontus; Graf, Kelly E.; Metspalu, Mait et al.

    Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

    Part of Nature, p. 87-+, 2014.

  • Skoglund, Pontus; Stora, Jan; Gotherstrom, Anders; Jakobsson, Mattias

    Accurate sex identification of ancient human remains using DNA shotgun sequencing

    Part of Journal of Archaeological Science, p. 4477-4482, 2013.

  • Barbieri, Chiara; Vicente, Mário; Rocha, Jorge; Mpoloka, Sununguko W et al.

    Ancient substructure in early mtDNA lineages of southern Africa.

    Part of American Journal of Human Genetics, 2013.

  • Jay, Flora; Sjödin, Per; Jakobsson, Mattias; Blum, Michael G. B.

    Anisotropic Isolation by Distance: The Main Orientations of Human Genetic Differentiation

    Part of Molecular biology and evolution, p. 513-525, 2013.

  • Lombard, Marlize; Schlebusch, Carina; Soodyall, Himla

    Bridging disciplines to better elucidate the evolution of early Homo sapiens in southern Africa

    Part of South African Journal of Science, 2013.

  • Gattepaille, Lucie M.; Jakobsson, Mattias; Blum, M. G. B.

    Inferring population size changes with sequence and SNP data: lessons from human bottlenecks

    Part of Heredity, p. 409-419, 2013.

  • Schlebusch, Carina M.; Lombard, Marlize; Soodyall, Himla

    MtDNA control region variation affirms diversity and deep sub-structure in populations from southern Africa

    Part of BMC Evolutionary Biology, p. 56-, 2013.

    Open access
  • Günther, Torsten; Lampei, Christian; Schmid, Karl J

    Mutational bias and gene conversion affect the intraspecific nitrogen stoichiometry of the Arabidopsis thaliana transcriptome.

    Part of Molecular biology and evolution, p. 561-8, 2013.

  • Schlebusch, Carina M.; Lewis Jr., C. M.; Vahter, Marie; Engström, Karin et al.

    Possible positive selection for an arsenic-protective haplotype in humans

    Part of Journal of Environmental Health Perspectives, p. 53-58, 2013.

  • Günther, Torsten; Coop, Graham

    Robust identification of local adaptation from allele frequencies.

    Part of Genetics, p. 205-20, 2013.

  • Schlebusch, Carina M; Sjödin, Per; Skoglund, Pontus; Jakobsson, Mattias

    Stronger signal of recent selection for lactase persistence in Maasai than in Europeans

    Part of European Journal of Human Genetics, p. 550-553, 2013.

  • Jakobsson, Mattias; Edge, Michael D.; Rosenberg, Noah A.

    The Relationship Between F-ST and the Frequency of the Most Frequent Allele

    Part of Genetics, p. 515-528, 2013.

  • Kjellström, A.; Edlund, Hanna; Lembring, Maria; Ahlgren, Viktoria et al.

    An Analysis of the Alleged Skeletal Remains of Carin Göring

    Part of PLoS ONE, p. e44366-, 2012.

    Open access
  • Svensson, Emma M.; Telldahl, Ylva; Sjöling, Emma; Sundkvist, Anneli et al.

    Coat colour and sex identification in horses from Iron Age Sweden

    Part of Annals of Anatomy, p. 82-87, 2012.

  • Gattepaille, Lucie M.; Jakobsson, Mattias

    Combining Markers into Haplotypes Can Improve Population Structure Inference

    Part of Genetics, p. 159-174, 2012.

  • Li, Sen; Jakobsson, Mattias

    Estimating demographic parameters from large-scale population genomic data using Approximate Bayesian Computation

    Part of BMC Genetics, p. 22-, 2012.

    Open access
  • Schlebusch, Carina M.; Soodyall, Himla

    Extensive Population Structure in San, Khoe, and Mixed Ancestry Populations from Southern Africa Revealed by 44 Short 5-SNP Haplotypes

    Part of Human Biology, p. 695-724, 2012.

  • Malmström, Helena; Vretemark, Maria; Tillmar, Andreas; Brandström Durling, Mikael et al.

    Finding the founder of Stockholm: A kinship study based on Y-chromosomal, autosomal and mitochondrial DNA

    Part of Annals of Anatomy, p. 138-145, 2012.

  • Schlebusch, Carina M; Soodyall, Himla; Jakobsson, Mattias

    Genetic variation of 15 autosomal STR loci in various populations from southern Africa

    Part of Forensic Science International, p. e20-e21, 2012.

  • Schlebusch, Carina M.; Skoglund, Pontus; Sjödin, Per; Gattepaille, Lucie M. et al.

    Genomic Variation in Seven Khoe-San Groups Reveals Adaptation and Complex African History

    Part of Science, p. 374-379, 2012.

  • Hübner, Sariel; Günther, Torsten; Flavell, Andrew; Fridman, Eyal et al.

    Islands and streams: clusters and gene flow in wild barley populations from the Levant.

    Part of Molecular Ecology, p. 1115-29, 2012.

  • Li, Junrui; Li, Haipeng; Jakobsson, Mattias; Li, Sen et al.

    Joint analysis of demography and selection in population genetics: where do we stand and where could we go?

    Part of Molecular Ecology, p. 28-44, 2012.

  • Nyström, Veronica; Humphrey, Joanne; Skoglund, Pontus; McKeown, Niall J et al.

    Microsatellite genotyping reveals end-Pleistocene decline in mammoth autosomal genetic variation

    Part of Molecular Ecology, p. 3391-3402, 2012.

  • Davis, Simon J. M.; Svensson, Emma M.; Albarella, Umberto; Detry, Cleia et al.

    Molecular and osteometric sexing of cattle metacarpals: a case study from 15th century AD Beja, Portugal

    Part of Journal of Archaeological Science, p. 1445-1454, 2012.

  • Fraser, Magdalena; Sten, Sabine; Götherström, Anders

    Neolithic Hedgehogs (Erinaceus europaeus) from the Island of Gotland show early contacts with the Swedish mainland

    Part of Journal of Archaeological Science, p. 229-233, 2012.

  • Skoglund, Pontus; Malmström, Helena; Raghavan, Maanasa; Storå, Jan et al.

    Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe

    Part of Science, p. 466-469, 2012.

  • Telldahl, Y.; Svensson, Emma M.; Götherström, Anders; Storå, J.

    Osteometric and molecular sexing of cattle metapodia

    Part of Journal of Archaeological Science, p. 121-127, 2012.

  • Sjödin, Per; Sjöstrand, Agnès E.; Jakobsson, Mattias; Blum, Michael G. B.

    Resequencing Data Provide No Evidence for a Human Bottleneck in Africa during the Penultimate Glacial Period

    Part of Molecular biology and evolution, p. 1851-1860, 2012.

  • Skoglund, Pontus; Jakobsson, Mattias

    Archaic human ancestry in East Asia

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 18301-18306, 2011.

  • Blum, Michael G. B.; Jakobsson, Mattias

    Deep Divergences of Human Gene Trees and Models of Human Origins

    Part of Molecular biology and evolution, p. 889-898, 2011.

  • Skoglund, Pontus; Götherström, Anders; Jakobsson, Mattias

    Estimation of Population Divergence Times from Non-Overlapping Genomic Sequences: Examples from Dogs and Wolves

    Part of Molecular biology and evolution, p. 1505-1517, 2011.

  • Babiker, Hiba; Schlebusch, Carina M; Hassan, Hisham Y; Jakobsson, Mattias

    Genetic variation and population structure of Sudanese populations as indicated by 15 Identifiler sequence-tagged repeat (STR) loci.

    Part of Investigative Genetics, 2011.

  • Huang, Lucy; Jakobsson, Mattias; Pemberton, Trevor J.; Ibrahim, Muntaser et al.

    Haplotype variation and genotype imputation in African populations

    Part of Genetic Epidemiology, p. 766-780, 2011.

  • Günther, Torsten; Schmid, Karl J

    Improved haplotype-based detection of ongoing selective sweeps towards an application in Arabidopsis thaliana.

    Part of BMC research notes, p. 232-, 2011.

  • Günther, Torsten; Gawenda, Inka; Schmid, Karl J

    phenosim--A software to simulate phenotypes for testing in genome-wide association studies.

    Part of BMC bioinformatics, p. 265-, 2011.

  • Telldahl, Ylva; Svensson, Emma; Götherström, Anders; Storå, Jan

    Typing Late Prehistoric Cows and Bulls: Osteology and Genetics of Cattle at the Eketorp Ringfort on the Öland Island in Sweden

    Part of PLOS ONE, p. e20748 e20748-, 2011.

    Open access
  • Günther, Torsten; Schmitt, Armin O; Bortfeldt, Ralf H; Hinney, Anke et al.

    Where in the genome are significant single nucleotide polymorphisms from genome-wide association studies located?

    Part of Omics, p. 507-12, 2011.

  • Cao, Jun; Schneeberger, Korbinian; Ossowski, Stephan; Günther, Torsten et al.

    Whole-genome sequencing of multiple Arabidopsis thaliana populations.

    Part of Nature genetics, p. 956-63, 2011.

  • Bærholm Schnell, Ida; Fraser, Magdalena; Willerslev, Eske; Gilbert, M. Thomas P.

    Characterisation of insect and plant origins using DNA extracted from small volumes of bee honey

    Part of Arthropod-Plant Interactions, p. 107-116, 2010.

  • Wang, Z.A.; Szpiech, Z.A.; Degnan, J.H.; Jakobsson, Mattias et al.

    Comparing spatial maps of human population-genetic variation using Procrustes analysis

    Part of Statistical Applications in Genetics and Molecular Biology, p. e13-, 2010.

  • Günther, Torsten; Schmid, Karl J

    Deleterious amino acid polymorphisms in Arabidopsis thaliana and rice.

    Part of Theoretical and Applied Genetics, p. 157-68, 2010.

  • Malmström, Helena; Linderholm, Anna; Liden, Kerstin; Stora, Jan et al.

    High frequency of lactose intolerance in a prehistoric hunter-gatherer population in northern Europe

    Part of BMC Evolutionary Biology, p. 89-, 2010.

  • Schlebusch, Carina

    Issues raised by use of ethnic-group names in genome study

    Part of Nature, p. 487-487, 2010.

  • Eklund, D. Magnus; Svensson, Emma M.; Kost, Benedikt

    Physcomitrella patens: a model to investigate the role of RAC/ROP GTPase signalling in tip growth

    Part of Journal of Experimental Botany, p. 1917-1937, 2010.

  • Childs, Liam H; Witucka-Wall, Hanna; Günther, Torsten; Sulpice, Ronan et al.

    Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth-related metabolic traits in Arabidopsis thaliana.

    Part of BMC genomics, p. 188-, 2010.

  • Malmström, Helena; Gilbert, M. Thomas P.; Thomas, Mark G.; Brandström, Mikael et al.

    Ancient DNA Reveals Lack of Continuity between Neolithic Hunter-Gatherers and Contemporary Scandinavians

    Part of Current Biology, p. 1758-1762, 2009.

  • Jakobsson, Mattias

    COMPASS: a program for generating serial samples under an infinite sites model

    Part of Bioinformatics, p. 2845-2847, 2009.

  • DeGiorgio, Michael; Jakobsson, Mattias; Rosenberg, Noah A.

    Explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from Africa

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 16057-16062, 2009.

  • Schroeder, Kari B.; Jakobsson, Mattias; Crawford, Michael H.; Schurr, Theodore G. et al.

    Haplotypic background of a private allele at high frequency in the Americas

    Part of Molecular biology and evolution, p. 995-1016, 2009.

  • Wolf, Jochen B. W.; Kuenstner, Axel; Nam, Kiwoong; Jakobsson, Mattias et al.

    Nonlinear Dynamics of Nonsynonymous (d(N)) and Synonymous (d(S)) Substitution Rates Affects Inference of Selection

    Part of Genome Biology and Evolution, p. 308-319, 2009.

  • Pemberton, Trevor J.; Sandefur, Conner I.; Jakobsson, Mattias; Rosenberg, Noah A.

    Sequence determinants of human microsatellite variability

    Part of BMC Bioinformatics, p. e612-, 2009.

  • Szpiech, Z.A.; Jakobsson, Mattias; Rosenberg, N.A.

    ADZE: a rarefaction approach for counting alleles private to combinations of populations

    Part of Bioinformatics, p. 2498-2504, 2008.

  • Malmström, Helena; Vilà, Carles; Gilbert, M Thomas P; Storå, Jan et al.

    Barking up the wrong tree: Modern northern European dogs fail to explain their origin

    Part of BMC Evolutionary Biology, 2008.

    Open access
  • Svensson, Emma; Götherström, Anders

    Temporal fluctuations of Y-chromosomal variation in Bos taurus

    Part of Biology Letters, p. 752-754, 2008.

  • Rosenberg, Noah A.; Jakobsson, Mattias

    The relationship between homozygosity and the frequency of the most frequent allele

    Part of Genetics, p. 2027-2036, 2008.