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Uppsala University Uppsala University Department of Organismal Biology
Department of Organismal Biology

Korall Lab

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Uppsala University Department of Organismal ... Research Systematic biology Korall Lab Publications
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Korall Lab

  • Research areas
  • Popular Science Presentation
  • Publications
  • People

Publications

  • Complex effects of mammalian grazing on extramatrical mycelial biomass in the Scandes forest-tundra ecotone.

    Vowles, T., Lindwall, F., Ekblad, A., Bahram, M., Furneaux, B. et al. (2018). Ecology and Evolution, vol. 8, ss. 1019-1030 DOI
  • High-level classification of the Fungi and a tool for evolutionary ecological analyses.

    Tedersoo, L., Sanchez-Ramirez, S., Koljalg, U., Bahram, M., Doring, M. et al. (2018). Fungal diversity, . vol. 90, ss. 135-159 DOI
  • Multigene phylogeny and taxonomic revision of Atheliales s.l.: Reinstatement of three families and one new family, Lobuliciaceae fam. nov..

    Sulistyo, B., Larsson, K., Haelewaters, D., Ryberg, M. (2021). Fungal Biology, . vol. 125, ss. 239-255 DOI
  • Impact of model assumptions on the inference of the evolution of ectomycorrhizal symbiosis in fungi.

    Sheikh, S., Kalsoom, F., Bahram, M., Ryberg, M. (2022). Scientific Reports, . vol. 12 DOI
  • Dating the emergence of truffle-like fungi in Australia, by using an augmented meta-analysis.

    Sheedy, E., Ryberg, M., Lebel, T., May, T., Bougher, N. et al. (2016). Australian Systematic Botany, vol. 29, ss. 284-302 DOI
  • Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi.

    Sanchez-Garcia, M., Ryberg, M., Kalsoom Khan, F., Varga, T., Nagy, L. et al. (2020). Proceedings of the National Academy of Sciences of the United States of America, . vol. 117, ss. 32528-32534 DOI
  • New light on names and naming of dark taxa.

    Ryberg, M., Nilsson, R. (2018). MycoKeys, . ss. 31-39 DOI
  • On the evolution of ectomycorrhizal fungi.

    Ryberg, M., Kalsoom, F., Sanchez-Garcia, M. (2022). Mycosphere, . vol. 13 DOI
  • Molecular operational taxonomic units as approximations of species in the light of evolutionary models and empirical data from Fungi.

    Ryberg, M. (2015). Molecular Ecology, vol. 24, ss. 5770-5777 DOI
  • Phylommand - a command line software package for phylogenetics [version 1; referees: awaiting peer review].

    Ryberg, M. (2016). F1000 Research, vol. 5 DOI
  • Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota).

    Rosenblad, M., Martin, M., Tedersoo, L., Ryberg, M., Larsson, E. et al. (2016). MycoKeys, ss. 21-33 DOI
  • FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles.

    Polme, S., Abarenkov, K., Henrik Nilsson, R., Lindahl, B., Clemmensen, K. et al. (2020). Fungal diversity, . vol. 105, ss. 1-16 DOI
  • The evolution of Massarineae with Longipedicellataceae fam. nov..

    Phukhamsakda, C., Hongsanan, S., Ryberg, M., Ariyawansa, H., Chomnunti, P. et al. (2016). Mycosphere, vol. 7, ss. 1713-1731 DOI
  • Host genetic variation strongly influences the microbiome structure and function in fungal fruiting-bodies.

    Pent, M., Hiltunen, M., Poldmaa, K., Furneaux, B., Hildebrand, F. et al. (2018). Environmental Microbiology, . vol. 20, ss. 1641-1650 DOI
  • Molecular phylogenetics and taxonomy in Psathyrellaceae (Agaricales) with focus on psathyrelloid species: introduction of three new genera and 18 new species.

    Orstadius, L., Ryberg, M., Larsson, E. (2015). Mycological progress, vol. 14 DOI
  • Top 50 most wanted fungi.

    Nilsson, R., Wurzbacher, C., Bahram, M., Coimbra, V., Larsson, E. et al. (2016). MycoKeys, ss. 29-40 DOI
  • A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts.

    Nilsson, R., Tedersoo, L., Ryberg, M., Kristiansson, E., Hartmann, M. et al. (2015). Microbes and Environments, vol. 30, ss. 145-150 DOI
  • Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory.

    Nilsson, R., Sánchez-García, M., Ryberg, M., Abarenkov, K., Wurzbacher, C. et al. (2017). MycoKeys, vol. 26, ss. 13-24 DOI
  • Soil fungal communities of ectomycorrhizal dominated woodlands across West Africa.

    Meidl, P., Furneaux, B., Tchan, K., Kluting, K., Ryberg, M. et al. (2021). MycoKeys, . vol. 81, ss. 45-68 DOI
  • Into and out of the tropics: global diversification patterns in a hyperdiverse clade of ectomycorrhizal fungi.

    Looney, B., Ryberg, M., Hampe, F., Sanchez-Garcia, M., Matheny, P. (2016). Molecular Ecology, vol. 25, ss. 630-647 DOI
  • Ranking higher taxa using divergence times: a case study in Dothideomycetes.

    Liu, J., Hyde, K., Jeewon, R., Phillips, A., Maharachchikumbura, S. et al. (2017). Fungal diversity, . vol. 84, ss. 75-99 DOI
  • Another dark taxon comes to light: Eludereomycetes, class nov. (Pucciniomycotina, Basidiomycota), and its first known living representative, Eluderea minerophilus, gen. et sp. nov..

    Kluting, Kerri L.; Sánchez-García, Marisol; Tuovinen, Veera; Strid, Ylva; Ryberg, Martin et al.
  • Naming the untouchable - environmental sequences and niche partitioning as taxonomical evidence in fungi.

    Kalsoom Khan, F., Kluting, K., Tangrot, J., Urbina, H., Ammunet, T. et al. (2020). IMA Fungus, . vol. 11 DOI
  • Phylogenetic diversity and affiliation of tropical African ectomycorrhizal fungi.

    Houdanon, R., Furneaux, B., Yorou, N., Ryberg, M. (2022). Mycosphere, . vol. 13 DOI
  • ARBitR: an overlap-aware genome assembly scaffolder for linked reads.

    Hiltunen, M., Ryberg, M., Johannesson, H. (2021). Bioinformatics, vol. 37, ss. 2203-2205 DOI
  • No inheritance of vegetative mutations into sexual spores of the fungus Marasmius oreades.

    Hiltunen, Markus; Ryberg, Martin; Johannesson, Hanna
  • Maintenance of High Genome Integrity over Vegetative Growth in the Fairy-Ring Mushroom Marasmius oreades.

    Hiltunen, M., Grudzinska-Sterno, M., Wallerman, O., Ryberg, M., Johannesson, H. (2019). Current Biology, . vol. 29, ss. 2758-2765 DOI
  • Dynamics of transposon activity and genomic rearrangements in natural and cultured isolates of the fairy-ring fungus Marasmius oreades.

    Hiltunen, Markus; Ament-Velásquez, Sandra Lorena; Ryberg, Martin; Johannesson, Hanna
  • Global Multilocus Sequence Type Analysis of Chlamydia trachomatis Strains from 16 Countries.

    Herrmann, B., Isaksson, J., Ryberg, M., Tangrot, J., Saleh, I. et al. (2015). Journal of Clinical Microbiology, vol. 53, ss. 2172-2179 DOI
  • The genus Catathelasma (Catathelasmataceae, Basidiomycota) in China.

    Ge, Z., Wu, J., Hao, Y., Zhang, Q., An, Y. et al. (2020). MycoKeys, . ss. 123-138 DOI
  • Phylogeny and evolution of morphological structures in a highly diverse lineage of fruiting-body-forming amoebae, order Trichiales (Myxomycetes, Amoebozoa).

    Garcia-Cunchillos, I., Zamora, J., Ryberg, M., Lado, C. (2022). Molecular Phylogenetics and Evolution, . vol. 177 DOI
  • Comparison of wild mushroom use by ethnic groups surrounding the Upper Ouémé Reserve Forest in Benin, West Africa..

    Furneaux, Brendan R.; Veldman, Sarina; Riggi, Laura; Boni, Souleymane; Svanholm, Anneli et al.
  • Both ectomycorrhizal tree diversity and soil characteristics structure ectomycorrhizal mushroom communities, and production in Sudanian savanna woodlands.

    Furneaux, Brendan R.; Houdanon, Roël; Aïgnon, Hyppolite; Boni, Souleymane; Codjia, J. Evans et al.
  • Long- and short-read metabarcoding technologies reveal similar spatio-temporal structures in fungal communities.

    Furneaux, Brendan R.; Bahram, Mohammad; Rosling, Anna; Yorou, Nourou S.; Ryberg, Martin
  • Long- and short-read metabarcoding technologies reveal similar spatiotemporal structures in fungal communities.

    Furneaux, B., Bahram, M., Rosling, A., Yorou, N., Ryberg, M. (2021). Molecular Ecology Resources, . vol. 21, ss. 1833-1849 DOI
  • When mycologists describe new species, not all relevant information is provided (clearly enough).

    Durkin, L., Jansson, T., Sanchez, M., Khomich, M., Ryberg, M. et al. (2020). MycoKeys, . ss. 109-128 DOI
  • Amanita sect. Phalloideae: two interesting non-lethal species from West Africa.

    Codjia, J., Wang, P., Ryberg, M., Yorou, N., Yang, Z. (2022). Mycological progress, . vol. 21 DOI
  • Historical biogeography and diversification of ringless Amanita (section Vaginatae) support an African origin and suggest niche conservatism in the Americas.

    Codjia, J., Sanchez-Ramirez, S., Ebika, S., Wu, G., Margaritescu, S. et al. (2023). Molecular Phylogenetics and Evolution, . vol. 178 DOI
  • Morphology, Multilocus Phylogeny, and Toxin Analysis Reveal Amanita albolimbata, the First Lethal Amanita Species From Benin, West Africa.

    Codjia, J., Cai, Q., Zhou, S., Luo, H., Ryberg, M. et al. (2020). Frontiers in Microbiology, vol. 11 DOI
  • The genome and microbiome of a dikaryotic fungus (Inocybe terrigena, Inocybaceae) revealed by metagenomics.

    Bahram, M., Vanderpool, D., Pent, M., Hiltunen, M., Ryberg, M. (2018). Environmental Microbiology Reports, . vol. 10, ss. 155-166 DOI
  • Structure and function of the global topsoil microbiome..

    Bahram, M., Hildebrand, F., Forslund, S., Anderson, J., Soudzilovskaia, N. et al. (2018). Nature, vol. 560, ss. 233-237 DOI
  • Paxilloboletus gen. nov., a new lamellate bolete genus from tropical Africa.

    Badou, S., Furneaux, B., De Kesel, A., Kalsoom, F., Houdanon, R. et al. (2022). Mycological progress, . vol. 21, ss. 243-256 DOI
  • Two new African siblings of Pulveroboletus ravenelii (Boletaceae).

    Badou, S., De Kesel, A., Raspe, O., Ryberg, M., Guelly, A. et al. (2018). MycoKeys, ss. 115-130 DOI
  • Mallocybe africana (Inocybaceae, Fungi), the first species of Mallocybe described from Africa.

    Aignon, H., Naseer, A., Matheny, B., Yorou, N., Ryberg, M. (2021). Phytotaxa, . vol. 478, ss. 49-60 DOI
  • Three new species of Inosperma (Agaricales, Inocybaceae) from Tropical Africa.

    Aignon, H., Jabeen, S., Naseer, A., Yorou, N., Ryberg, M. (2021). MycoKeys, . ss. 97-116 DOI
  • The curse of the uncultured fungus.

    Abarenkov, K., Kristiansson, E., Ryberg, M., Nogal-Prata, S., Gomez-Martinez, D. et al. (2022). MycoKeys, . ss. 177-194 DOI
  • Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard - a report from a May 23-24, 2016 workshop (Gothenburg, Sweden).

    Abarenkov, K., Adams, R., Irinyi, L., Agan, A., Ambrosio, E. et al. (2016). MycoKeys, ss. 1-15 DOI
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