Publications
Five most recent publications (peer-reviewed):
[40] Symonová, R., Suh, A. (2019) Nucleotide composition of transposable elements likely contributes to AT/GC compositional homogeneity of teleost fish genomes. Mobile DNA 10, 49. Link.
[39] Kinsella, C. M.*, Ruiz-Ruano, F. J.*, Dion-Côté, A.-M., Charles, A. J., Gossmann, T. I., Cabrero, J., Kappei, D., Hemmings, N., Simons, M. J. P., Camacho, J. P. M., Forstmeier, W., Suh, A. (2019) Programmed DNA elimination of germline development genes in songbirds. Nature Communications 10, 5468. Preprint. Link. *equal contributions.
[38] Schweizer, M.*, Warmuth, V.*, Kakhki, N. A.*, Aliabadian, M., Förschler, M., Shirihai, H., Ewels, P., Gruselius, J., Olsen, R.-A., Taborsak-Lines, F., Suh, A., Burri, R. (2019) Genome-wide evidence supports mitochondrial relationships and pervasive parallel phenotypic evolution in open-habitat chats. Molecular Phylogenetics and Evolution 139, 106568. Link.
[37] Boman, J., Frankl-Vilches, C., da Silva dos Santos, M., de Oliveira, E. H. C., Gahr, M., Suh, A. (2019) The genome of blue-capped cordon-bleu uncovers hidden diversity of LTR retrotransposons in zebra finch. Genes 10: 301. Link.
[36] Xu, L., Auer, G., Peona, V., Suh, A., Deng, Y., Feng, S., Zhang, G., Blom, M., Christidis, L., Prost, S., Irestedt, M., Zhou, Q. (2019) Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds. Nature Ecology and Evolution 3, 834–844. Preprint. Link.
A complete and frequently updated publication list can be found on Alexander Suh's personal website and on Google Scholar. See below for peer-reviewed publications published since 2013.
Publications since 2013
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Satellite DNA evolution in Corvoidea inferred from short and long reads.
(2023). Molecular Ecology, . vol. 32, ss. 1288-1305 DOI -
Runs of homozygosity reveal past bottlenecks and contemporary inbreeding across diverging populations of an island-colonizing bird.
(2023). Molecular Ecology, . vol. 32, ss. 1972-1989 DOI -
Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds.
(2022). Science Advances, vol. 8 DOI -
A Phylogenomic Assessment of Processes Underpinning Convergent Evolution in Open-Habitat Chats.
(2023). Molecular biology and evolution, . vol. 40 DOI -
The swan genome and transcriptome, it is not all black and white.
(2023). Genome Biology, . vol. 24 DOI -
Mendelian nightmares: the germline-restricted chromosome of songbirds.
(2022). Chromosome Research, . vol. 30, ss. 255-272 DOI -
Genomic associations with poxvirus across divergent island populations in Berthelot's pipit.
(2022). Molecular Ecology, . vol. 31, ss. 3154-3173 DOI -
The genomic basis of the plant island syndrome in Darwin's giant daisies.
(2022). Nature Communications, . vol. 13 DOI -
Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots.
(2022). Nature Communications, . vol. 13 DOI -
Rapid GRC-linked gene expression divergence in Ficedula flycatchers and implications for spermatogenesis.
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Occasional paternal inheritance of the germline-restricted chromosome in songbirds.
(2022). Proceedings of the National Academy of Sciences of the United States of America, . vol. 119 DOI -
Seasonal migration patterns and the maintenance of evolutionary diversity in a cryptic bird radiation.
(2022). Molecular Ecology, . vol. 31, ss. 632-645 DOI -
Genetic Barriers to Historical Gene Flow between Cryptic Species of Alpine Bumblebees Revealed by Comparative Population Genomics.
(2021). Molecular biology and evolution, . vol. 38, ss. 3126-3143 DOI -
Genome Stability Is in the Eye of the Beholder: CR1 Retrotransposon Activity Varies Significantly across Avian Diversity.
(2021). Genome Biology and Evolution, . vol. 13 DOI -
Transposon- and Genome Dynamics in the Fungal Genus Neurospora: Insights from Nearly Gapless Genome Assemblies.
(2022). Fungal Genetics Reports, vol. 66 DOI -
Genome Size Reduction and Transposon Activity Impact tRNA Gene Diversity While Ensuring Translational Stability in Birds.
(2021). Genome Biology and Evolution, . vol. 13 DOI -
New Perspectives on the Evolution of Within-Individual Genome Variation and Germline/Soma Distinction.
(2021). Genome Biology and Evolution, . vol. 13 DOI -
Horizontal transfer and subsequent explosive expansion of a DNA transposon in sea kraits (Laticauda).
(2021). Biology Letters, . vol. 17 DOI -
Meiosis and beyond - understanding the mechanistic and evolutionary processes shaping the germline genome.
(2021). Biological Reviews, . vol. 96, ss. 822-841 DOI -
Unboxing mutations: Connecting mutation types with evolutionary consequences.
(2021). Molecular Ecology, . vol. 30, ss. 2710-2723 DOI -
A brief review of vertebrate sex evolution with a pledge for integrative research: towards 'sexomics'.
(2021). Philosophical Transactions of the Royal Society of London. Biological Sciences, vol. 376 DOI -
Satellite DNA evolution in Corvides inferred from short and long reads.
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The hidden structural variability in avian genomes.
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The avian W chromosome is a refugium for endogenous retroviruses with likely effects on female-biased mutational load and genetic incompatibilities.
(2021). Philosophical Transactions of the Royal Society of London. Biological Sciences, vol. 376 DOI -
TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation.
(2021). Mobile DNA, vol. 12 DOI -
Long-term persistence of supernumerary B chromosomes in multiple species of Astyanax fish.
(2021). BMC Biology, . vol. 19 DOI -
Linked-read sequencing enables haplotype-resolved resequencing at population scale.
(2020). Molecular Ecology Resources, . vol. 20, ss. 1311-1322 DOI -
Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird-of-paradise.
(2021). Molecular Ecology Resources, . vol. 21, ss. 263-286 DOI -
New Environment, New Invaders-Repeated Horizontal Transfer of LINEs to Sea Snakes.
(2020). Genome Biology and Evolution, . vol. 12, ss. 2370-2383 DOI -
Comparative analysis of morabine grasshopper genomes reveals highly abundant transposable elements and rapidly proliferating satellite DNA repeats.
(2020). BMC Biology, vol. 18 DOI -
Dense sampling of bird diversity increases power of comparative genomics.
(2020). Nature, . vol. 587, ss. 252-257 DOI -
Why Do Some Sex Chromosomes Degenerate More Slowly Than Others?: The Odd Case of Ratite Sex Chromosomes.
(2020). Genes, vol. 11 DOI -
The tuatara genome reveals ancient features of amniote evolution.
(2020). Nature, . vol. 584, ss. 403-409 DOI -
Discovery and population genomics of structural variation in a songbird genus.
(2020). Nature Communications, . vol. 11 DOI -
The Enterprise, a massive transposon carrying Spok meiotic drive genes.
(2021). Genome Research, vol. 31, ss. 789-798 DOI -
Nucleotide composition of transposable elements likely contributes to AT/GC compositional homogeneity of teleost fish genomes.
(2019). Mobile DNA, . vol. 10 DOI -
Programmed DNA elimination of germline development genes in songbirds.
(2019). Nature Communications, . vol. 10 DOI -
Genome-wide evidence supports mitochondrial relationships and pervasive parallel phenotypic evolution in open-habitat chats.
(2019). Molecular Phylogenetics and Evolution, vol. 139 DOI -
Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise.
(2019). GigaScience, . vol. 8 DOI -
Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds.
(2019). Nature Ecology & Evolution, . vol. 3, ss. 834-844 DOI -
The Genome of Blue-Capped Cordon-Bleu Uncovers Hidden Diversity of LTR Retrotransposons in Zebra Finch.
(2019). Genes, . vol. 10 DOI -
Genome Size Evolution: Small Transposons with Large Consequences.
(2019). Current Biology, . vol. 29, ss. R241-R243 DOI -
Parallel plumage colour evolution and introgressive hybridization in wheatears.
(2019). Journal of Evolutionary Biology, vol. 32, ss. 100-110 DOI -
Bridging gaps in transposable element research with single-molecule and single-cell technologies.
(2018). Mobile DNA, vol. 9 DOI -
How complete are "complete" genome assemblies?: An avian perspective.
(2018). Molecular Ecology Resources, . vol. 18, ss. 1188-1195 DOI -
Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia).
(2018). G3, . vol. 8, ss. 1391-1398 DOI -
Natural selection beyond genes: Identification and analyses of evolutionarily conserved elements in the genome of the collared flycatcher (Ficedula albicollis).
(2018). Molecular Ecology, . vol. 27, ss. 476-492 DOI -
Abundant recent activity of retrovirus-like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes.
(2018). Molecular Ecology, . vol. 27, ss. 99-111 DOI -
De-novo emergence of SINE retroposons during the early evolution of passerine birds.
(2017). Mobile DNA, vol. 8 DOI -
Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies.
(2017). Genome Biology and Evolution, vol. 9, ss. 2491-2505 DOI